Let’s start with point 4 I made about Sante-Lhoutellier 2008
Looking at the diagram (see next post), there is most certainly a significant difference. I could care less about the ANOVA. The authors even point out that there is a 2-fold increase in proteolysis. I am certain that if they repeated the study with a higher number points in between the results would be statistically significant. As we both point out, the two shorter cooking times exhibit much higher rates, and getting significantly less with increased cooking time to the point of a decrease. This is also noted in the discussion by the authors.
I was outright incorrect about the cooking temperatures being lower, they are in fact higher as you point out. Meat is considered cooked when internal temperature reaches 60-75 Celcius (140-170 Fahrenheit), in this study they reached that point in about 4 minutes based on the graph for the 30 minute group. The high temperature one actually reached 170 Celcius but was only at this temperature briefly.
It may be better to characterize this as cooking normally leads to increased proteolysis in the intestines and decreased in the stomach, but overcooking eliminates those gains and thensome if left longer. This is mentioned in a link found through the Gatellier et al. 2009 study:
Clifford, W. M. : Biochem. Jour., 1930, xxiv., 1728. as reported in The Lancet, Feb. 21, 1931, 422.
The gist is that there are favourable benefits of lightly cooked (brown through) meat and that overcooking (boiling for hour) removed said benefit. Also, heating up normally cooked meat does not destroy its digestibility.
The importance of pepsin proteolysis is chiefly for uncooked food so it can proceed to the intestine for further proteolysis by the pancreatic enzymes. This is the important step in digestion of protein from a perspective of amino acid uptake potential. And the rate seems to be twice as high. This must more than make up for the decreased pepsin proteolysis rate as evidenced by the results of the python study and other similar ones it cited.
As for the collagen, the author may have been mistaken, careless or whatnot, the temperature for myofibils is around 10 Celcius lower, or maybe collagen was picked because it required the highest temperature.
So on further analysis, it seems that the pancreatic enzyme data actually support the notion that cooking meat has benefits. I have a bunch of abstracts that I am tracking down full texts for with more pertinent info.
If anything good comes up, I will post it, but I think at this point the matter of pepsin digestion is explained by the body’s response to uncooked versus cooked meat as all types of cooking resulted in similar changes in protein structure and proteolysis by pepsin. Further, reasonable cooking seems to induce increased pancreatic digestion.